Neuroinformatics and Facilitating Analysis:
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March 28, 2018
Samir Das
Software Manager
McGill Centre for Integrative Neuroscience
Montreal Neurological Institute
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Adrian Thorogood BIC lecture - March 9, 2016 |
INCF, Open Science Framework, NITRC, Allen Institute, NDAR, Open fMRI, Organization Human Brain Mapping, Human Brain Project, Compute Canada, Maelstrom, UK Biobank, Edinburgh BRAINS ImageBank, BRAIN, ENIGMA, Enhanced Nathan Kline Institute (1000 Functional Connectomes), LONI, GAAIN, COINS, XNAT, BrainSpell, VIP, SPM, BrainCode, FSL, FBIRN, Synapse, CIMA-Q, NeuroDevNet, GUSTO, QPN, The NeuroBureau, ABCD...
So many initiatives!
ADNI, ICBM, NIHPD, Allen Mouse Brain, IBIS, Generation-R, ABIDE, ABIDE Preprocessed, ADHD 200, ADHD Preprocessed, Human Connectome Project, OMEGA, UK Biobank, Edinburgh Biobank, BigBrain, Talairach, 1000 Functional Connectomes, Colin 27, MNI 305, 1000 Brains, AAL, ANIMAL, MAVAN, PreventAD, PING, MNI 152, MNI 305, FSL...
So many datasets!
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Neurovault, NeuroSynth, CIVET, VIP, Boutiques, Git-Annex, SOLID, BIDS, NiDM, DiCAT, DCMTK, NiPype, ITK, Freesurfer, SPM, FSL, Mobile MRI, 1000 Brains, AAL, BrainCode, GitHub, Amazon Cloud, FSL, IDA, BrainVisa, DICOM Confidential, DockerHub, Datalad, Clowdr...
So many Tools!
Common Ontology for Imaging Data |
Format for storing metadata, provenance, processing information
More citations (Piwowar & Vision, 2013)
Access to larger datasets
Greater exposure
Validation of your data
More collaborations
Increased funding
Thank you!Acknowledgements: Alan Evans, Alex Zijdenbos, Dario Vins, Jonathan Harlap, Matt Charlet, Andrew Corderey, Sebastian Muehlboeck, Reza Adalat, Louis Collins, Vladimir Fonov, Marc Rousseau, Mia Petkova, Rathi Gnanasekaran, David Brownlee, Tarek Sherif, Pierre Rioux, Nic Kassis, Leigh MacIntyre, Claude Lepage, Ilana Leppert, Natasha Beck, Tristan Glatard, Bert Vincent, Lindsay Lewis, Najma Mahani, Elodie Portales-Casamar, Alden Woodward, Sylvain Milot, Jean Francois Malouin, Sylvain Baillet, Daniel Kroetz, Martin Weiss, Mathieu Desrosier, Jason Karamchandani, Amit Bar-Or, Ted Fon, John Brietner, Derek Lo, Patrick Bermudez, Chris Steele, Pamela Patterson and one of my favourites: Pierre Bellec! LORIS team on left (special thanks to Christine Rogers for listening to me.) |